Anchored HTML File of EIDs

	WEB-based GEne SeT AnaLysis Toolkit

	*Translating gene lists into biological insights...*

User data and parameters: User data: textAreaUpload.txt, Organism: hsapiens, Id Type: ensembl_gene_stable_id, Ref Set: entrezgene, Significance Level: Top10, Statistics Test: Hypergeometric, MTC: BH, Minimum: 2

The results for each enriched gene sets are listed in this table.
For each gene set, the first row lists database name, gene set name , and corresponding gene set ID.
The second row lists the following statistics:

C: the number of reference genes in the category
O: the number of genes in the gene set and also in the category
E: the expected number in the category
R: ratio of enrichment
rawP: p value from hypergeometric test
adjP: p value adjusted by the multiple test adjustment

Finally, genes in the pathway are listed. For each gene, the table lists the user uploaded ID and value (optional), Entrez ID, Ensembl Gene Stable ID, Gene symbol, and description. Ensembl Gene Stable ID and Entrez Gene ID are linked to the Ensembl and Entrez Gene databases, respectively.

Database:KEGG pathway Name:Axon guidance ID:04360
C=129; O=3; E=0.09; R=33.43; rawP=0.0001; adjP=0.0002
Index	UserID	Value	Gene Symbol	Gene Name	EntrezGene	Ensembl
1	ENSG00000107731	NA	UNC5B	unc-5 homolog B (C. elegans)	219699	ENSG00000107731
2	ENSG00000138835	NA	RGS3	regulator of G-protein signaling 3	5998	ENSG00000138835
3	ENSG00000182580	NA	EPHB3	EPH receptor B3	2049	ENSG00000182580

Database:KEGG pathway Name:Endocytosis ID:04144
C=201; O=3; E=0.14; R=21.46; rawP=0.0004; adjP=0.0004
Index	UserID	Value	Gene Symbol	Gene Name	EntrezGene	Ensembl
1	ENSG00000090565	NA	RAB11FIP3	RAB11 family interacting protein 3 (class II)	9727	ENSG00000090565
2	ENSG00000126803	NA	HSPA2	heat shock 70kDa protein 2	3306	ENSG00000126803
3	ENSG00000013016	NA	EHD3	EH-domain containing 3	30845	ENSG00000013016

WebGestalt is currently developed and maintained by Jing Wang and Bing Zhang at the Zhang Lab. Other people who have made significant contribution to the project include Dexter Duncan, Stefan Kirov, Zhiao Shi, and Jay Snoddy.

Funding credits: NIH/NIAAA (U01 AA016662, U01 AA013512); NIH/NIDA (P01 DA015027); NIH/NIMH (P50 MH078028, P50 MH096972); NIH/NCI (U24 CA159988); NIH/NIGMS (R01 GM088822).